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A brief resume is displayed below. Please download the PDF to see a longer version.

Basics

Name Jeongjae Lee
Label Postbaccalaureate Researcher
Email jaysquirrel2000@gmail.com
Url https://jaylee2000.github.io/

Work

  • 2024.09 - 2025.08
    Postbaccalaureate Researcher
    Graduate School of AI, KAIST
    Worked on foundational model for clinical time-series data. Improved a CycleGAN-based scatter correction software for Chest X-ray images.
    • TimeVQVAE
    • Wavelet-CycleGAN
  • 2023.01 - 2023.12
    Research Intern
    DeepMetrics
    Involved in a project devising a method for automated control of mechanical ventilators in intensive care units.
    • Decision Tree
    • Time-Series Data
  • 2022.06 - 2022.12
    Research Intern
    Seoul National University
    Involved in development of Foldseek. Developed optimized code for LDDT alignment score computation, and established an automated protein database update pipeline for Foldseek's web server.
    • Spatial Hashing
    • SIMD Instructions

Education

  • 2025.09 - 2027.08

    Seoul, Republic of Korea

    M.S.
    Korea Advanced Institute of Science and Technology, Seoul, Republic of Korea
    Graduate School of AI
  • 2019.03 - 2024.08

    Seoul, Republic of Korea

    B.S.
    Seoul National University, Seoul, Republic of Korea
    Electrical and Computer Engineering

Awards

  • 2024
    Summa Cum Laude
    Seoul National University
  • 2019
    Presidential Science Scholarship
    Korea Scholarship Foundation
    Full tuition plus 2.5 million won per semester, awarded to talented students majoring in science or engineering.
  • 2022
    Medical AI Scholarship
    Korea Health Industry Development Institute
    3 million won per semester, merit-based scholarship

Publications

  • 2025.09.30
    PCPO: Proportionate Credit Policy Optimization for Aligning Image Generation Models
    ICLR 2026
    PCPO is an improvement on GRPO for fine-tuning generative models.
  • 2023.05.08
    Fast and accurate protein structure search with Foldseek
    Nature Biotechnology
    As structure prediction methods are generating millions of publicly available protein structures, searching these databases is becoming a bottleneck. Foldseek aligns the structure of a query protein against a database by describing tertiary amino acid interactions within proteins as sequences over a structural alphabet. Foldseek decreases computation times by four to five orders of magnitude with 86%, 88% and 133% of the sensitivities of Dali, TM-align and CE, respectively.

Languages

Korean
Native speaker
English
Fluent

Interests

AI Alignment
Reinforcement Learning
Diffusion / Flow Models
Medical Artificial Intelligence
Medical Informatics
Biomedical Signal Processing

References

Professor Jong Chul Ye
Current research advisor at KAIST. He is a leading expert in the field of medical AI, and has published numerous papers in top-tier journals and conferences.
Professor Hyun Oh Song
Research advisor at DeepMetrics. He is an established researcher in the field of deep learning, and is the CEO of DeepMetrics, a medical AI startup.
Professor Martin Steinegger
Research advisor at Seoul National University. He is a leading expert in the field of bioinformatics, and has published many papers in top-tier journals. He is the developer of many bioinformatics tools, including Foldseek.