cv
A brief resume is displayed below. Please download the PDF to see a longer version.
Basics
| Name | Jeongjae Lee |
| Label | Postbaccalaureate Researcher |
| jaysquirrel2000@gmail.com | |
| Url | https://jaylee2000.github.io/ |
Work
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2024.09 - 2025.08 Postbaccalaureate Researcher
Graduate School of AI, KAIST
Worked on foundational model for clinical time-series data. Improved a CycleGAN-based scatter correction software for Chest X-ray images.
- TimeVQVAE
- Wavelet-CycleGAN
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2023.01 - 2023.12 Research Intern
DeepMetrics
Involved in a project devising a method for automated control of mechanical ventilators in intensive care units.
- Decision Tree
- Time-Series Data
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2022.06 - 2022.12 Research Intern
Seoul National University
Involved in development of Foldseek. Developed optimized code for LDDT alignment score computation, and established an automated protein database update pipeline for Foldseek's web server.
- Spatial Hashing
- SIMD Instructions
Education
Awards
- 2024
Summa Cum Laude
Seoul National University
- 2019
Presidential Science Scholarship
Korea Scholarship Foundation
Full tuition plus 2.5 million won per semester, awarded to talented students majoring in science or engineering.
- 2022
Medical AI Scholarship
Korea Health Industry Development Institute
3 million won per semester, merit-based scholarship
Publications
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2025.09.30 PCPO: Proportionate Credit Policy Optimization for Aligning Image Generation Models
ICLR 2026
PCPO is an improvement on GRPO for fine-tuning generative models.
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2023.05.08 Fast and accurate protein structure search with Foldseek
Nature Biotechnology
As structure prediction methods are generating millions of publicly available protein structures, searching these databases is becoming a bottleneck. Foldseek aligns the structure of a query protein against a database by describing tertiary amino acid interactions within proteins as sequences over a structural alphabet. Foldseek decreases computation times by four to five orders of magnitude with 86%, 88% and 133% of the sensitivities of Dali, TM-align and CE, respectively.
Languages
| Korean | |
| Native speaker |
| English | |
| Fluent |
Interests
| AI Alignment | |
| Reinforcement Learning | |
| Diffusion / Flow Models |
| Medical Artificial Intelligence | |
| Medical Informatics | |
| Biomedical Signal Processing |
References
| Professor Jong Chul Ye | |
| Current research advisor at KAIST. He is a leading expert in the field of medical AI, and has published numerous papers in top-tier journals and conferences. |
| Professor Hyun Oh Song | |
| Research advisor at DeepMetrics. He is an established researcher in the field of deep learning, and is the CEO of DeepMetrics, a medical AI startup. |
| Professor Martin Steinegger | |
| Research advisor at Seoul National University. He is a leading expert in the field of bioinformatics, and has published many papers in top-tier journals. He is the developer of many bioinformatics tools, including Foldseek. |